STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0895TRAP-type C4-dicarboxylate transport system; Periplasmic component. (337 aa)    
Predicted Functional Partners:
amb0893
TRAP-type C4-dicarboxylate transport system; Large permease component.
  
 0.970
amb0894
TRAP-type C4-dicarboxylate transport system; Small permease component.
 
  
 0.950
amb0423
Hypothetical protein HI0147.
  
 0.923
amb0808
TRAP-type C4-dicarboxylate transport system; Large permease component.
  
 0.841
amb0896
C4-dicarboxylate transport sensor protein dctS.
 
   
 0.626
amb0898
Response regulator.
    
 0.607
amb2583
TRAP-type mannitol/chloroaromatic compound transport system, large permease component.
   
 0.593
amb0897
Response regulator.
     
 0.558
amb0809
Hypothetical protein.
  
  
 0.467
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.