Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb0896C4-dicarboxylate transport sensor protein dctS. (655 aa)    
Predicted Functional Partners:
amb0897
Response regulator.
 
 0.995
amb2930
Sensor protein barA.
  
 
 0.935
amb1110
Signal transduction histidine kinase.
  
 
 0.903
amb1432
Signal transduction histidine kinase.
  
 
 0.897
amb0650
Predicted periplasmic ligand-binding sensor domain.
  
 
 0.896
amb0898
Response regulator.
 
 
 0.890
amb1873
Signal transduction histidine kinase.
  
 
 0.877
amb2293
Signal transduction histidine kinase.
 
 
0.868
amb1947
Predicted ATPase.
 
 
 0.828
amb1841
Hypothetical protein.
  
 
 0.821
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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