STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0898Response regulator. (216 aa)    
Predicted Functional Partners:
amb3654
Hypothetical 1041 kDa protein in hypE 3'region.
  
 
 0.945
amb0896
C4-dicarboxylate transport sensor protein dctS.
 
 0.887
amb2932
Methylase of chemotaxis methyl-accepting protein.
    
 0.882
amb3291
Signal transduction histidine kinase.
 
 0.842
amb3558
C4-dicarboxylate transport sensor protein dctB.
  
 
 0.827
amb1434
Signal transduction histidine kinase.
  
 
 0.821
amb3879
Methylase of chemotaxis methyl-accepting protein.
      0.764
amb0895
TRAP-type C4-dicarboxylate transport system; Periplasmic component.
    
 0.607
amb0897
Response regulator.
 
    
0.577
amb2930
Sensor protein barA.
   
 
 0.566
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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