Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb0902Membrane protein; Related to metalloendopeptidase. (462 aa)    
Predicted Functional Partners:
amb3236
Membrane carboxypeptidase/penicillin-binding protein.
 
   
 0.685
amb0524
Membrane carboxypeptidase.
  
   
 0.629
amb2308
ABC-type Zn2+ transport system, periplasmic component/surface adhesin.
 
  
 0.576
amb2257
Signal peptidase I; Belongs to the peptidase S26 family.
 
  
 0.558
secD
Preprotein translocase subunit SecD; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
   
 0.505
secF
Preprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
 
   
 0.478
amb2965
Membrane carboxypeptidase/penicillin-binding protein PbpC.
  
     0.467
amb3935
Uncharacterized protein conserved in bacteria.
  
  
 0.459
amb3220
Uncharacterized conserved protein.
 
   0.446
amb2845
Hypothetical protein.
  
     0.428
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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