STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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Gene Fusion
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Coexpression
Experiments
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[Homology]
Score
mms7Tightly bound bacterial magnetic particle protein; Helps regulate magnetite crystal morphology, probably in a single growth axis. May help control oxido-reduction reactions surrounding the crystal lattice of the forming magnetite mineral (Probable). Probably binds Fe(2+), may play a role in nucleation of magnetite crystal formation (Probable). Expression in a deletion mutant restores growth of spherical (wild-type) magnetite crystals. Increased protein levels allow crystal growth in the minor axis but not increased numbers of crystals. (314 aa)    
Predicted Functional Partners:
mms13
Tightly bound bacterial magnetic particle protein; Probably involved in magnetite crystal growth (Probable). The lumenal domain may bind the magnetite crystals, affecting crystal size and shape (Probable).
     
 0.916
mamF
Hypothetical protein; Plays a role in regulating magnetite crystal size; partially redundant function with MmsF.
     
 0.821
mamG
Bacterial magnetic particle specificiron-binding protein; Plays a role in regulating magnetite crystal size. Belongs to the magnetosome MamG (TC 9.B.95) protein family.
     
 0.722
mms6
Bacterial magnetic particle specific iron-binding protein; Promotes the formation of magnetite in Fe(2+)-rich conditions, when magnetite is not readily formed. Binds Fe(3+) and Fe(2+) (Probable). May play a role in nucleation of magnetite crystal formation (Probable). May help control production of crystals with a specific morphology (Probable). Greatly improves the formation of magnetosome-like magnetite crystals in vitro. Isolated short protein, probably residues 75-133, binds up to 18 Fe(3+) per monomer and self-assembles into micelles about 21-26 nm in diameter; the C-terminal 21 [...]
     
 0.718
mamE
Trypsin-like serine protease, typically periplasmic; Acts at 2 distinct steps of magnetosome formation; required for correct localization of proteins to the magnetosome while the protease activity is required for maturation of small magnetite crystals into larger, functional ones. The 2 functions are separable by mutation. Probably cleaves at least itself, MamO and MamP; cleavage requires the putative transport domain of MamO (Probable). Involved in localization of some proteins (at least MamA, MamC, MamF, MamI and MamJ) to the magnetosome.
      
 0.578
mamB
Predicted Co/Zn/Cd cation transporters; Plays a dual, essential role in magnetosome formation; required for magnetosome vesicle formation as well as biomineralization (Probable). Probably binds and transports iron (By similarity). Requires heterodimerization with MamM for stability (By similarity); Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family.
      
 0.578
mmsF
Hypothetical protein; Plays a major role in synthesis of cubooctahedral magnetite crystals by controlling crystal growth and morphology after nucleation. Has a partially redundant function with MamF (By similarity). When overexpressed in E.coli the soluble protein self assembles into shells of about 36 nm. This protein mediates the formation of magnetite nanoparticles from a solution of Fe(2+) and Fe(3+) sulfate; the crystals are larger and lack alternative iron oxide/oxyhydroxide species seen in the protein's absence.
     
 0.538
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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