Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| amb0955 | mamF | amb0955 | amb0953 | Hypothetical protein. | Hypothetical protein; Plays a role in regulating magnetite crystal size; partially redundant function with MmsF. | 0.443 |
| amb0955 | mamG | amb0955 | amb0954 | Hypothetical protein. | Bacterial magnetic particle specificiron-binding protein; Plays a role in regulating magnetite crystal size. Belongs to the magnetosome MamG (TC 9.B.95) protein family. | 0.457 |
| amb0955 | mmsF | amb0955 | amb0957 | Hypothetical protein. | Hypothetical protein; Plays a major role in synthesis of cubooctahedral magnetite crystals by controlling crystal growth and morphology after nucleation. Has a partially redundant function with MamF (By similarity). When overexpressed in E.coli the soluble protein self assembles into shells of about 36 nm. This protein mediates the formation of magnetite nanoparticles from a solution of Fe(2+) and Fe(3+) sulfate; the crystals are larger and lack alternative iron oxide/oxyhydroxide species seen in the protein's absence. | 0.432 |
| mamF | amb0955 | amb0953 | amb0955 | Hypothetical protein; Plays a role in regulating magnetite crystal size; partially redundant function with MmsF. | Hypothetical protein. | 0.443 |
| mamF | mamG | amb0953 | amb0954 | Hypothetical protein; Plays a role in regulating magnetite crystal size; partially redundant function with MmsF. | Bacterial magnetic particle specificiron-binding protein; Plays a role in regulating magnetite crystal size. Belongs to the magnetosome MamG (TC 9.B.95) protein family. | 0.832 |
| mamF | mms13 | amb0953 | amb0951 | Hypothetical protein; Plays a role in regulating magnetite crystal size; partially redundant function with MmsF. | Tightly bound bacterial magnetic particle protein; Probably involved in magnetite crystal growth (Probable). The lumenal domain may bind the magnetite crystals, affecting crystal size and shape (Probable). | 0.825 |
| mamF | mms7 | amb0953 | amb0952 | Hypothetical protein; Plays a role in regulating magnetite crystal size; partially redundant function with MmsF. | Tightly bound bacterial magnetic particle protein; Helps regulate magnetite crystal morphology, probably in a single growth axis. May help control oxido-reduction reactions surrounding the crystal lattice of the forming magnetite mineral (Probable). Probably binds Fe(2+), may play a role in nucleation of magnetite crystal formation (Probable). Expression in a deletion mutant restores growth of spherical (wild-type) magnetite crystals. Increased protein levels allow crystal growth in the minor axis but not increased numbers of crystals. | 0.821 |
| mamG | amb0955 | amb0954 | amb0955 | Bacterial magnetic particle specificiron-binding protein; Plays a role in regulating magnetite crystal size. Belongs to the magnetosome MamG (TC 9.B.95) protein family. | Hypothetical protein. | 0.457 |
| mamG | mamF | amb0954 | amb0953 | Bacterial magnetic particle specificiron-binding protein; Plays a role in regulating magnetite crystal size. Belongs to the magnetosome MamG (TC 9.B.95) protein family. | Hypothetical protein; Plays a role in regulating magnetite crystal size; partially redundant function with MmsF. | 0.832 |
| mamG | mms13 | amb0954 | amb0951 | Bacterial magnetic particle specificiron-binding protein; Plays a role in regulating magnetite crystal size. Belongs to the magnetosome MamG (TC 9.B.95) protein family. | Tightly bound bacterial magnetic particle protein; Probably involved in magnetite crystal growth (Probable). The lumenal domain may bind the magnetite crystals, affecting crystal size and shape (Probable). | 0.685 |
| mamG | mms7 | amb0954 | amb0952 | Bacterial magnetic particle specificiron-binding protein; Plays a role in regulating magnetite crystal size. Belongs to the magnetosome MamG (TC 9.B.95) protein family. | Tightly bound bacterial magnetic particle protein; Helps regulate magnetite crystal morphology, probably in a single growth axis. May help control oxido-reduction reactions surrounding the crystal lattice of the forming magnetite mineral (Probable). Probably binds Fe(2+), may play a role in nucleation of magnetite crystal formation (Probable). Expression in a deletion mutant restores growth of spherical (wild-type) magnetite crystals. Increased protein levels allow crystal growth in the minor axis but not increased numbers of crystals. | 0.722 |
| mamG | mmsF | amb0954 | amb0957 | Bacterial magnetic particle specificiron-binding protein; Plays a role in regulating magnetite crystal size. Belongs to the magnetosome MamG (TC 9.B.95) protein family. | Hypothetical protein; Plays a major role in synthesis of cubooctahedral magnetite crystals by controlling crystal growth and morphology after nucleation. Has a partially redundant function with MamF (By similarity). When overexpressed in E.coli the soluble protein self assembles into shells of about 36 nm. This protein mediates the formation of magnetite nanoparticles from a solution of Fe(2+) and Fe(3+) sulfate; the crystals are larger and lack alternative iron oxide/oxyhydroxide species seen in the protein's absence. | 0.503 |
| mms13 | mamF | amb0951 | amb0953 | Tightly bound bacterial magnetic particle protein; Probably involved in magnetite crystal growth (Probable). The lumenal domain may bind the magnetite crystals, affecting crystal size and shape (Probable). | Hypothetical protein; Plays a role in regulating magnetite crystal size; partially redundant function with MmsF. | 0.825 |
| mms13 | mamG | amb0951 | amb0954 | Tightly bound bacterial magnetic particle protein; Probably involved in magnetite crystal growth (Probable). The lumenal domain may bind the magnetite crystals, affecting crystal size and shape (Probable). | Bacterial magnetic particle specificiron-binding protein; Plays a role in regulating magnetite crystal size. Belongs to the magnetosome MamG (TC 9.B.95) protein family. | 0.685 |
| mms13 | mms7 | amb0951 | amb0952 | Tightly bound bacterial magnetic particle protein; Probably involved in magnetite crystal growth (Probable). The lumenal domain may bind the magnetite crystals, affecting crystal size and shape (Probable). | Tightly bound bacterial magnetic particle protein; Helps regulate magnetite crystal morphology, probably in a single growth axis. May help control oxido-reduction reactions surrounding the crystal lattice of the forming magnetite mineral (Probable). Probably binds Fe(2+), may play a role in nucleation of magnetite crystal formation (Probable). Expression in a deletion mutant restores growth of spherical (wild-type) magnetite crystals. Increased protein levels allow crystal growth in the minor axis but not increased numbers of crystals. | 0.916 |
| mms13 | mmsF | amb0951 | amb0957 | Tightly bound bacterial magnetic particle protein; Probably involved in magnetite crystal growth (Probable). The lumenal domain may bind the magnetite crystals, affecting crystal size and shape (Probable). | Hypothetical protein; Plays a major role in synthesis of cubooctahedral magnetite crystals by controlling crystal growth and morphology after nucleation. Has a partially redundant function with MamF (By similarity). When overexpressed in E.coli the soluble protein self assembles into shells of about 36 nm. This protein mediates the formation of magnetite nanoparticles from a solution of Fe(2+) and Fe(3+) sulfate; the crystals are larger and lack alternative iron oxide/oxyhydroxide species seen in the protein's absence. | 0.571 |
| mms7 | mamF | amb0952 | amb0953 | Tightly bound bacterial magnetic particle protein; Helps regulate magnetite crystal morphology, probably in a single growth axis. May help control oxido-reduction reactions surrounding the crystal lattice of the forming magnetite mineral (Probable). Probably binds Fe(2+), may play a role in nucleation of magnetite crystal formation (Probable). Expression in a deletion mutant restores growth of spherical (wild-type) magnetite crystals. Increased protein levels allow crystal growth in the minor axis but not increased numbers of crystals. | Hypothetical protein; Plays a role in regulating magnetite crystal size; partially redundant function with MmsF. | 0.821 |
| mms7 | mamG | amb0952 | amb0954 | Tightly bound bacterial magnetic particle protein; Helps regulate magnetite crystal morphology, probably in a single growth axis. May help control oxido-reduction reactions surrounding the crystal lattice of the forming magnetite mineral (Probable). Probably binds Fe(2+), may play a role in nucleation of magnetite crystal formation (Probable). Expression in a deletion mutant restores growth of spherical (wild-type) magnetite crystals. Increased protein levels allow crystal growth in the minor axis but not increased numbers of crystals. | Bacterial magnetic particle specificiron-binding protein; Plays a role in regulating magnetite crystal size. Belongs to the magnetosome MamG (TC 9.B.95) protein family. | 0.722 |
| mms7 | mms13 | amb0952 | amb0951 | Tightly bound bacterial magnetic particle protein; Helps regulate magnetite crystal morphology, probably in a single growth axis. May help control oxido-reduction reactions surrounding the crystal lattice of the forming magnetite mineral (Probable). Probably binds Fe(2+), may play a role in nucleation of magnetite crystal formation (Probable). Expression in a deletion mutant restores growth of spherical (wild-type) magnetite crystals. Increased protein levels allow crystal growth in the minor axis but not increased numbers of crystals. | Tightly bound bacterial magnetic particle protein; Probably involved in magnetite crystal growth (Probable). The lumenal domain may bind the magnetite crystals, affecting crystal size and shape (Probable). | 0.916 |
| mms7 | mmsF | amb0952 | amb0957 | Tightly bound bacterial magnetic particle protein; Helps regulate magnetite crystal morphology, probably in a single growth axis. May help control oxido-reduction reactions surrounding the crystal lattice of the forming magnetite mineral (Probable). Probably binds Fe(2+), may play a role in nucleation of magnetite crystal formation (Probable). Expression in a deletion mutant restores growth of spherical (wild-type) magnetite crystals. Increased protein levels allow crystal growth in the minor axis but not increased numbers of crystals. | Hypothetical protein; Plays a major role in synthesis of cubooctahedral magnetite crystals by controlling crystal growth and morphology after nucleation. Has a partially redundant function with MamF (By similarity). When overexpressed in E.coli the soluble protein self assembles into shells of about 36 nm. This protein mediates the formation of magnetite nanoparticles from a solution of Fe(2+) and Fe(3+) sulfate; the crystals are larger and lack alternative iron oxide/oxyhydroxide species seen in the protein's absence. | 0.538 |
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