STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb0959Uncharacterized membrane-bound protein. (469 aa)    
Predicted Functional Partners:
amb0958
Uncharacterized protein; Conserved in bacteria.
     
 0.818
amb0601
Hypothetical protein.
  
     0.703
amb4421
Uroporphyrinogen-III synthase; Catalyzes cyclization of the linear tetrapyrrole, hydroxymethylbilane, to the macrocyclic uroporphyrinogen III.
 
     0.703
amb4492
Kinesin-like protein K39.
  
  
 0.701
amb2741
Uncharacterized protein; Conserved in bacteria.
  
     0.661
amb0421
Inactivated superfamily I helicase.
  
     0.660
amb3864
Hypothetical protein.
  
     0.631
amb3051
Transcriptional regulator.
  
     0.626
amb4151
Hypothetical protein.
  
   
 0.614
amb4162
ATP-dependent exoDNAse beta subunit; Helicase and exonuclease domains; Belongs to the helicase family. UvrD subfamily.
  
     0.580
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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