Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 annotation | node2 annotation | score |
| amb0650 | amb0995 | Predicted periplasmic ligand-binding sensor domain. | PAS/PAC domain. | 0.413 |
| amb0650 | amb1110 | Predicted periplasmic ligand-binding sensor domain. | Signal transduction histidine kinase. | 0.990 |
| amb0650 | amb1432 | Predicted periplasmic ligand-binding sensor domain. | Signal transduction histidine kinase. | 0.981 |
| amb0650 | amb2930 | Predicted periplasmic ligand-binding sensor domain. | Sensor protein barA. | 0.975 |
| amb0994 | amb0995 | Methyl-accepting chemotaxis protein; Probable methyl-accepting taxis protein. May be the receptor that senses the torque generated from the interaction between the magnetosome dipole moment and the external magnetic field (Probable). Overproduction interferes with magnetotaxis, cells respond more slowly to changes in the magnetic field; requires the MamK-interacting C- terminus of the protein. The effect of magnetic sensing is to control flagellar rotation. | PAS/PAC domain. | 0.873 |
| amb0994 | amb1110 | Methyl-accepting chemotaxis protein; Probable methyl-accepting taxis protein. May be the receptor that senses the torque generated from the interaction between the magnetosome dipole moment and the external magnetic field (Probable). Overproduction interferes with magnetotaxis, cells respond more slowly to changes in the magnetic field; requires the MamK-interacting C- terminus of the protein. The effect of magnetic sensing is to control flagellar rotation. | Signal transduction histidine kinase. | 0.433 |
| amb0994 | amb1432 | Methyl-accepting chemotaxis protein; Probable methyl-accepting taxis protein. May be the receptor that senses the torque generated from the interaction between the magnetosome dipole moment and the external magnetic field (Probable). Overproduction interferes with magnetotaxis, cells respond more slowly to changes in the magnetic field; requires the MamK-interacting C- terminus of the protein. The effect of magnetic sensing is to control flagellar rotation. | Signal transduction histidine kinase. | 0.451 |
| amb0994 | amb2930 | Methyl-accepting chemotaxis protein; Probable methyl-accepting taxis protein. May be the receptor that senses the torque generated from the interaction between the magnetosome dipole moment and the external magnetic field (Probable). Overproduction interferes with magnetotaxis, cells respond more slowly to changes in the magnetic field; requires the MamK-interacting C- terminus of the protein. The effect of magnetic sensing is to control flagellar rotation. | Sensor protein barA. | 0.442 |
| amb0995 | amb0650 | PAS/PAC domain. | Predicted periplasmic ligand-binding sensor domain. | 0.413 |
| amb0995 | amb0994 | PAS/PAC domain. | Methyl-accepting chemotaxis protein; Probable methyl-accepting taxis protein. May be the receptor that senses the torque generated from the interaction between the magnetosome dipole moment and the external magnetic field (Probable). Overproduction interferes with magnetotaxis, cells respond more slowly to changes in the magnetic field; requires the MamK-interacting C- terminus of the protein. The effect of magnetic sensing is to control flagellar rotation. | 0.873 |
| amb0995 | amb1110 | PAS/PAC domain. | Signal transduction histidine kinase. | 0.427 |
| amb0995 | amb1432 | PAS/PAC domain. | Signal transduction histidine kinase. | 0.424 |
| amb0995 | amb2196 | PAS/PAC domain. | Methyl-accepting chemotaxis protein. | 0.468 |
| amb0995 | amb2930 | PAS/PAC domain. | Sensor protein barA. | 0.700 |
| amb1110 | amb0650 | Signal transduction histidine kinase. | Predicted periplasmic ligand-binding sensor domain. | 0.990 |
| amb1110 | amb0994 | Signal transduction histidine kinase. | Methyl-accepting chemotaxis protein; Probable methyl-accepting taxis protein. May be the receptor that senses the torque generated from the interaction between the magnetosome dipole moment and the external magnetic field (Probable). Overproduction interferes with magnetotaxis, cells respond more slowly to changes in the magnetic field; requires the MamK-interacting C- terminus of the protein. The effect of magnetic sensing is to control flagellar rotation. | 0.433 |
| amb1110 | amb0995 | Signal transduction histidine kinase. | PAS/PAC domain. | 0.427 |
| amb1110 | amb1432 | Signal transduction histidine kinase. | Signal transduction histidine kinase. | 0.993 |
| amb1110 | amb2196 | Signal transduction histidine kinase. | Methyl-accepting chemotaxis protein. | 0.433 |
| amb1110 | amb2930 | Signal transduction histidine kinase. | Sensor protein barA. | 0.990 |
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