Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb1002Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. (583 aa)    
Predicted Functional Partners:
amb1708
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
  
 
 
 0.789
amb3055
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
  
     0.692
limJ
FraH protein; Regulates the dynamic behavior of MamK filaments; paralog MamJ also promotes MamK turnover. At least one other protein besides MamJ and LimJ is required for MamK turnover. Might connect magnetosomes to MamK filaments (Probable).
       0.689
amb1004
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
 
   
0.687
amb0602
Outer membrane protein and related peptidoglycan-associated protein.
   
 
 0.681
amb1007
Predicted Co/Zn/Cd cation transporters.
 
   
 0.585
amb3878
Sensor protein gacS.
  
  
 0.569
amb1695
Ankyrin repeat.
  
 0.568
amb1005
Uncharacterized conserved protein.
 
   
 0.554
truA
Pseudouridylate synthase; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs.
 
  
 0.538
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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