STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1007Predicted Co/Zn/Cd cation transporters. (296 aa)    
Predicted Functional Partners:
amb1005
Uncharacterized conserved protein.
 
   
 0.816
amb1006
Hypothetical protein.
       0.773
amb1004
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
     
 0.632
amb1002
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
 
   
 0.585
mdh
Malate/lactate dehydrogenase; Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family.
  
    0.582
limJ
FraH protein; Regulates the dynamic behavior of MamK filaments; paralog MamJ also promotes MamK turnover. At least one other protein besides MamJ and LimJ is required for MamK turnover. Might connect magnetosomes to MamK filaments (Probable).
       0.484
mamH
Permease of the major facilitator superfamily; Required for correct biomineralization of the magnetosome; probably transports some form of iron. Partially functionally redundant with MamZ; Belongs to the major facilitator superfamily.
  
   
 0.426
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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