Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| amb1002 | amb1004 | amb1002 | amb1004 | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | 0.710 |
| amb1002 | amb1005 | amb1002 | amb1005 | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | Uncharacterized conserved protein. | 0.639 |
| amb1002 | amb1006 | amb1002 | amb1006 | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | Hypothetical protein. | 0.518 |
| amb1002 | amb1007 | amb1002 | amb1007 | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | Predicted Co/Zn/Cd cation transporters. | 0.620 |
| amb1002 | mamH | amb1002 | amb0961 | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | Permease of the major facilitator superfamily; Required for correct biomineralization of the magnetosome; probably transports some form of iron. Partially functionally redundant with MamZ; Belongs to the major facilitator superfamily. | 0.444 |
| amb1004 | amb1002 | amb1004 | amb1002 | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | 0.710 |
| amb1004 | amb1005 | amb1004 | amb1005 | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | Uncharacterized conserved protein. | 0.726 |
| amb1004 | amb1006 | amb1004 | amb1006 | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | Hypothetical protein. | 0.624 |
| amb1004 | amb1007 | amb1004 | amb1007 | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | Predicted Co/Zn/Cd cation transporters. | 0.633 |
| amb1004 | mamO | amb1004 | amb0969 | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | Trypsin-like serine protease; Plays 2 roles; promotes magnetite nucleation/formation and activates the MamE protease (Probable). Despite its near conservation of a protease-like sequence, this is probably not a protease (Probable). Required in conjunction with MamP for proteolysis of at least MamE, itself and MamP. May transport a solute that controls MamE's protease activity. May place individual iron atoms into the magnetite lattice (Probable). In the N-terminal section; belongs to the peptidase S1C family. | 0.820 |
| amb1005 | amb1002 | amb1005 | amb1002 | Uncharacterized conserved protein. | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | 0.639 |
| amb1005 | amb1004 | amb1005 | amb1004 | Uncharacterized conserved protein. | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | 0.726 |
| amb1005 | amb1006 | amb1005 | amb1006 | Uncharacterized conserved protein. | Hypothetical protein. | 0.861 |
| amb1005 | amb1007 | amb1005 | amb1007 | Uncharacterized conserved protein. | Predicted Co/Zn/Cd cation transporters. | 0.882 |
| amb1005 | mamH | amb1005 | amb0961 | Uncharacterized conserved protein. | Permease of the major facilitator superfamily; Required for correct biomineralization of the magnetosome; probably transports some form of iron. Partially functionally redundant with MamZ; Belongs to the major facilitator superfamily. | 0.552 |
| amb1005 | mamM | amb1005 | amb0967 | Uncharacterized conserved protein. | Predicted Co/Zn/Cd cation transporters; Probably plays a role in biomineralization (Probable). Required for stable accumulation of MamB (By similarity). Probably binds and transports iron. May nucleate iron crystal formation (By similarity); Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family. | 0.513 |
| amb1005 | mamO | amb1005 | amb0969 | Uncharacterized conserved protein. | Trypsin-like serine protease; Plays 2 roles; promotes magnetite nucleation/formation and activates the MamE protease (Probable). Despite its near conservation of a protease-like sequence, this is probably not a protease (Probable). Required in conjunction with MamP for proteolysis of at least MamE, itself and MamP. May transport a solute that controls MamE's protease activity. May place individual iron atoms into the magnetite lattice (Probable). In the N-terminal section; belongs to the peptidase S1C family. | 0.706 |
| amb1006 | amb1002 | amb1006 | amb1002 | Hypothetical protein. | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | 0.518 |
| amb1006 | amb1004 | amb1006 | amb1004 | Hypothetical protein. | Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain. | 0.624 |
| amb1006 | amb1005 | amb1006 | amb1005 | Hypothetical protein. | Uncharacterized conserved protein. | 0.861 |
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