Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb1058HEAT repeat. (311 aa)    
Predicted Functional Partners:
amb1056
Succinate dehydrogenase/fumarate reductase; Flavoprotein subunit.
    0.983
amb1057
Ferredoxin.
 
    0.967
amb1860
ABC-type nitrate/sulfonate/bicarbonate transport systems; Periplasmic components.
 
    0.791
efp
Translation elongation factor P; Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
  
 0.783
amb1059
Polyferredoxin.
       0.756
amb1060
Ferredoxin.
  
    0.740
amb1859
ABC-type nitrate/sulfonate/bicarbonate transport system; Permease component.
 
    0.724
amb1854
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components.
 
    0.546
amb1858
ABC-type nitrate/sulfonate/bicarbonate transport system; ATPase component.
 
    0.536
pyrG
CTP synthase; Catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen. Regulates intracellular CTP levels through interactions with the four ribonucleotide triphosphates.
   
   0.467
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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