Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1094Mg2+ and Co2+ transporters; Containing CBS domain. (434 aa)    
Predicted Functional Partners:
amb1142
Membrane-fusion protein.
  
     0.535
amb1095
Hypothetical protein.
       0.521
amb1096
Magnetic particle membrane specific GTPase P16.
       0.502
amb1140
Outer membrane protein.
  
   
 0.492
amb3276
Outer membrane protein.
  
   
 0.457
amb4059
Outer membrane protein.
  
   
 0.455
amb1470
Hypothetical protein.
  
     0.407
amb0943
Membrane-fusion protein.
  
     0.401
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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