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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1114Ni,Fe-hydrogenase I large subunit. (512 aa)    
Predicted Functional Partners:
amb1115
Ni,Fe-hydrogenase I small subunit.
 0.999
amb1650
Ni,Fe-hydrogenase I small subunit.
 0.996
amb1943
Uptake hydrogenase.
 0.996
amb2225
Cytochrome b subunit of the bc complex.
  
 
 0.966
amb2282
Uptake hydrogenase.
 
 
 0.964
amb1644
Ni,Fe-hydrogenase I large subunit.
 
 
0.954
amb1647
Ni,Fe-hydrogenase I large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
  
  
 
0.923
amb2921
Fe-S-cluster-containing hydrogenase components 2.
  
 
 0.923
amb1942
Uptake hydrogenase.
  
  
 
0.912
amb3367
Sulfite reductase, dissimilatory-type alpha subunit.
     
 0.901
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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