STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1171Bacteriophage capsid protein. (472 aa)    
Predicted Functional Partners:
amb1169
Bacteriophage tail assembly protein.
  
 0.957
amb1172
Periplasmic serine protease.
 
  
 0.951
amb1168
Hypothetical protein.
 
     0.948
amb1173
Hypothetical protein.
 
  
 0.948
amb1174
Hypothetical protein.
 
     0.939
amb1176
Hypothetical protein.
 
     0.926
amb1175
Hypothetical protein.
 
     0.922
amb1177
Hypothetical protein.
 
     0.922
amb1178
Hypothetical protein.
 
     0.903
amb1179
Hypothetical protein.
 
     0.896
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.