STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1172Periplasmic serine protease. (404 aa)    
Predicted Functional Partners:
amb1171
Bacteriophage capsid protein.
 
  
 0.951
amb1173
Hypothetical protein.
 
    0.949
amb1174
Hypothetical protein.
 
     0.939
amb1169
Bacteriophage tail assembly protein.
 
    0.932
amb1168
Hypothetical protein.
 
     0.898
amb0374
Bacteriophage capsid protein.
 
  
 0.797
amb0376
Hypothetical protein.
 
    0.787
amb0377
Hypothetical protein.
 
     0.779
amb1176
Hypothetical protein.
 
     0.777
amb1175
Hypothetical protein.
 
     0.775
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.