Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1177Hypothetical protein. (142 aa)    
Predicted Functional Partners:
amb1175
Hypothetical protein.
 
     0.949
amb1176
Hypothetical protein.
 
     0.949
amb1169
Bacteriophage tail assembly protein.
 
     0.936
amb1168
Hypothetical protein.
 
     0.935
amb1178
Hypothetical protein.
 
     0.930
amb1179
Hypothetical protein.
 
     0.930
amb1171
Bacteriophage capsid protein.
 
     0.921
amb1173
Hypothetical protein.
 
     0.887
amb1166
Hypothetical protein.
 
     0.860
amb1174
Hypothetical protein.
 
     0.842
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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