Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1191Hypothetical protein. (131 aa)    
Predicted Functional Partners:
amb1192
Phage-related protein; Tail component.
  
    0.856
amb4443
Cell division protein.
   
 
 0.685
amb1190
Hypothetical protein.
      0.617
amb1189
Hypothetical protein.
       0.576
amb1193
Hypothetical protein.
  
  
 0.554
amb1194
Hypothetical protein.
       0.527
amb1183
Hypothetical protein.
       0.517
amb1184
Membrane protein; Involved in colicin uptake.
     
 0.509
amb1185
Hypothetical protein.
       0.507
amb1186
Hypothetical protein.
       0.507
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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