Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1195Predicted transcriptional regulator. (299 aa)    
Predicted Functional Partners:
amb1196
Predicted transcriptional regulator.
     0.978
amb1197
Site-specific recombinase; DNA invertase Pin homolog.
 
     0.948
amb1198
Hypothetical protein.
       0.643
amb3819
ATPase involved in chromosome partitioning.
 
 
 0.613
rsmG
Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division; Specifically methylates the N7 position of guanine in position 527 of 16S rRNA.
  
  
 0.612
amb0004
ATPase involved in chromosome partitioning.
  
 
 0.559
amb0547
ATPase involved in chromosome partitioning.
  
 
 0.559
amb1305
ATPase involved in chromosome partitioning.
  
 
 0.559
amb1961
ATPase involved in chromosome partitioning.
  
 
 0.559
amb3050
ATPase involved in chromosome partitioning.
  
 
 0.559
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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