STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1208Zn-dependent hydrolase; Including glyoxylase. (224 aa)    
Predicted Functional Partners:
amb2483
Lactoylglutathione lyase and related lyase.
 
  
 0.926
gloB
Zn-dependent hydrolase, including glyoxylase; Thiolesterase that catalyzes the hydrolysis of S-D-lactoyl- glutathione to form glutathione and D-lactic acid.
  
  
0.921
amb2985
FAD/FMN-containing dehydrogenase.
    
 0.906
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
  
 
 0.773
amb2206
Uncharacterized protein conserved in bacteria.
  
    0.675
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
   
 0.588
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
 
 
 0.586
amb1209
Predicted Rossmann fold nucleotide-binding protein.
       0.560
amb1817
Uncharacterized NAD(FAD)-dependent dehydrogenase.
   
 0.503
amb2173
Uncharacterized NAD(FAD)-dependent dehydrogenase.
   
 0.503
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.