Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
amb0759 | amb1211 | GGDEF domain. | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | 0.827 |
amb0759 | amb1535 | GGDEF domain. | Response regulator containing a CheY-like receiver domain and a GGDEF domain. | 0.402 |
amb1210 | amb1211 | Predicted membrane protein. | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | 0.777 |
amb1210 | amb1212 | Predicted membrane protein. | Hypothetical protein. | 0.773 |
amb1211 | amb0759 | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | GGDEF domain. | 0.827 |
amb1211 | amb1210 | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | Predicted membrane protein. | 0.777 |
amb1211 | amb1212 | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | Hypothetical protein. | 0.773 |
amb1211 | amb1535 | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | Response regulator containing a CheY-like receiver domain and a GGDEF domain. | 0.776 |
amb1211 | amb1945 | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | Response regulator; Containing a CheY-like receiver domain and a GGDEF domain. | 0.784 |
amb1211 | amb3261 | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | FOG: GGDEF domain. | 0.921 |
amb1211 | amb3447 | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | Signal transduction histidine kinase. | 0.893 |
amb1211 | amb3451 | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | Response regulator containing a CheY-like receiver domain and a GGDEF domain. | 0.956 |
amb1211 | amb3699 | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | FOG: GGDEF domain. | 0.780 |
amb1211 | amb4000 | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | Response regulator containing a CheY-like receiver domain and a GGDEF domain. | 0.925 |
amb1212 | amb1210 | Hypothetical protein. | Predicted membrane protein. | 0.773 |
amb1212 | amb1211 | Hypothetical protein. | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | 0.773 |
amb1535 | amb0759 | Response regulator containing a CheY-like receiver domain and a GGDEF domain. | GGDEF domain. | 0.402 |
amb1535 | amb1211 | Response regulator containing a CheY-like receiver domain and a GGDEF domain. | Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain. | 0.776 |
amb1535 | amb3261 | Response regulator containing a CheY-like receiver domain and a GGDEF domain. | FOG: GGDEF domain. | 0.433 |
amb1535 | amb3451 | Response regulator containing a CheY-like receiver domain and a GGDEF domain. | Response regulator containing a CheY-like receiver domain and a GGDEF domain. | 0.426 |
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