Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb1284Lysine 2,3-aminomutase. (344 aa)    
Predicted Functional Partners:
amb1283
Truncated possibly inactive lysyl-tRNA synthetase.
 
  
 0.926
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
     
 0.808
amb3654
Hypothetical 1041 kDa protein in hypE 3'region.
   
   0.494
amb3329
Hypothetical 1041 kDa protein in hypE 3'region.
   
   0.488
amb0322
Methylase of chemotaxis methyl-accepting protein.
    
   0.478
amb1963
Methylase of chemotaxis methyl-accepting protein.
    
   0.478
amb2932
Methylase of chemotaxis methyl-accepting protein.
    
   0.478
amb3003
Methylase of chemotaxis methyl-accepting protein.
    
   0.478
amb3879
Methylase of chemotaxis methyl-accepting protein.
    
   0.478
secF
Preprotein translocase subunit SecF; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA.
  
    0.419
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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