Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1287Lysophospholipase. (420 aa)    
Predicted Functional Partners:
amb1289
Flagellar motor protein.
  
 
 0.770
amb0495
DNA polymerase III; Gamma/tau subunits.
  
     0.744
amb0025
Hypothetical PE-PGRS family protein Rv1325c/MT1367 precursor; Msp1.
  
 
 0.732
amb1418
Predicted membrane protein.
 
   0.731
amb0319
Hypothetical protein.
  
     0.730
amb3189
Hypothetical protein.
 
    0.724
amb3928
Antifreeze glycopeptide polyprotein precursor.
  
   
 0.723
amb1288
Hypothetical protein.
       0.715
amb0021
Hypothetical protein.
  
     0.700
amb4317
Hypothetical protein.
  
     0.680
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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