Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1319Hypothetical protein. (260 aa)    
Predicted Functional Partners:
amb1318
Predicted transcriptional regulator.
       0.561
amb1110
Signal transduction histidine kinase.
  
 
 0.553
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
  
 
 0.522
amb1281
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
  
 
 0.521
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
   
 
 0.490
amb1317
Signal transduction histidine kinase.
  
  
 0.481
amb1841
Hypothetical protein.
  
 
 0.418
amb3438
Sensor protein gacS.
  
 
 0.418
amb4146
Signal transduction histidine kinase.
  
 
 0.418
amb1432
Signal transduction histidine kinase.
  
  
 0.413
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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