Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb1322Hypothetical protein. (228 aa)    
Predicted Functional Partners:
amb1323
TRAP-type C4-dicarboxylate transport system; Periplasmic component.
       0.773
amb0688
TPR repeat.
 
      0.770
amb3871
FOG: TPR repeat.
      0.603
amb2136
TPR repeat.
 
      0.599
amb1324
ABC-type nitrate/sulfonate/bicarbonate transport system; ATPase component.
       0.590
amb1325
ABC-type anion transport system; Duplicated permease component.
       0.582
amb2566
SAM-dependent methyltransferase.
    
 0.572
amb3060
FOG: TPR repeat.
    
 0.550
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
     
 0.465
amb1326
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis.
       0.407
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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