STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1323TRAP-type C4-dicarboxylate transport system; Periplasmic component. (339 aa)    
Predicted Functional Partners:
amb0423
Hypothetical protein HI0147.
 
  
 0.909
amb1322
Hypothetical protein.
       0.773
amb2797
Malonyl-CoA decarboxylase.
 
  
 0.717
amb1324
ABC-type nitrate/sulfonate/bicarbonate transport system; ATPase component.
       0.590
amb1325
ABC-type anion transport system; Duplicated permease component.
       0.582
amb0809
Hypothetical protein.
 
  
 0.531
amb3584
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II.
  
     0.480
amb0808
TRAP-type C4-dicarboxylate transport system; Large permease component.
 
  
 0.476
amb0894
TRAP-type C4-dicarboxylate transport system; Small permease component.
  
  
 0.469
amb2674
Cytochrome b subunit of formate dehydrogenase.
  
     0.451
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.