Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb1328GGDEF domain. (395 aa)    
Predicted Functional Partners:
amb1840
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
 
 
  
 0.917
amb4144
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
 
 
  
 0.913
amb3093
Predicted signal transduction protein containing a membrane domain; EAL and a GGDEF domain.
 
 0.901
amb1370
Response regulator; Consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain.
 
 
    0.899
amb3312
PvrR.
  
 0.863
amb1839
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
 
 
  
 0.851
amb3300
Predicted signal transduction protein containing sensor and EAL domains.
  
 0.818
amb2166
PvrR.
    0.791
amb1669
Predicted signal transduction protein containing sensor and EAL domains.
 
  
 0.788
amb0553
Response regulator; Containing a CheY-like receiver domain and an HD-GYP domain.
 
  
 0.784
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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