STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1367Squalene cyclase. (592 aa)    
Predicted Functional Partners:
amb1364
Nucleoside-diphosphate-sugar epimerase.
 
 
 0.945
amb1365
Glycosyltransferase; Involved in cell wall biogenesis.
 
     0.941
amb1366
Putative phytoene synthase.
 
  
 0.932
amb1369
Predicted Fe-S oxidoreductase.
   
 0.909
amb1368
Nucleoside phosphorylase.
 
   
 0.905
amb3099
Putative membrane protein actII-3.
 
     0.798
amb2509
Phytoene/squalene synthetase.
 
  
 0.788
amb2510
Hypothetical 446 kDa protein Y4AB.
 
   
 0.786
amb0416
Predicted integral membrane protein.
 
     0.784
amb3101
Hypothetical protein.
 
     0.774
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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