STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1399Plastocyanin precursor. (131 aa)    
Predicted Functional Partners:
amb1402
NirF protein.
 
 
   0.945
amb1401
Cytochrome c, mono- and diheme variants.
 
   
 0.845
amb1398
Cytochrome c-552 precursor.
 
     0.832
amb1405
Transcriptional regulator.
 
     0.826
amb1404
Transcriptional regulator.
 
     0.817
amb1403
Transcriptional regulator.
 
     0.814
amb1408
Nitrite reductase precursor.
 
 
 
 0.802
amb1400
Uroporphyrinogen-III methylase.
       0.773
amb1407
Transcriptional regulator.
 
     0.629
amb2775
NADH:ubiquinone oxidoreductase subunit 4; Chain M.
    
   0.608
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.