STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1402NirF protein. (424 aa)    
Predicted Functional Partners:
amb1401
Cytochrome c, mono- and diheme variants.
 
 
 0.995
amb1405
Transcriptional regulator.
 
  
 0.990
amb1403
Transcriptional regulator.
 
  
 0.977
amb1404
Transcriptional regulator.
 
  
 0.977
amb1407
Transcriptional regulator.
 
  
 0.975
amb1399
Plastocyanin precursor.
 
 
   0.945
amb1408
Nitrite reductase precursor.
 
 
0.917
amb1395
Nitrite reductase precursor.
 
 
 0.884
amb4165
Nitrite reductase precursor.
 
 
 0.884
amb2944
Nitric oxide reductase large subunit; Belongs to the heme-copper respiratory oxidase family.
 
 
 0.857
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.