Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1405Transcriptional regulator. (147 aa)    
Predicted Functional Partners:
amb1407
Transcriptional regulator.
  
0.996
amb1401
Cytochrome c, mono- and diheme variants.
 
  
 0.993
amb1402
NirF protein.
 
  
 0.993
amb1404
Transcriptional regulator.
  
0.993
amb1408
Nitrite reductase precursor.
 
  
 0.972
amb1403
Transcriptional regulator.
 
  
0.921
amb1395
Nitrite reductase precursor.
 
  
 0.867
amb4165
Nitrite reductase precursor.
 
  
 0.866
amb1400
Uroporphyrinogen-III methylase.
  
  
 0.859
amb2944
Nitric oxide reductase large subunit; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.851
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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