STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1407Transcriptional regulator. (160 aa)    
Predicted Functional Partners:
amb1405
Transcriptional regulator.
  
0.996
amb1401
Cytochrome c, mono- and diheme variants.
 
  
 0.985
amb1403
Transcriptional regulator.
   
0.983
amb1402
NirF protein.
 
    0.982
amb1408
Nitrite reductase precursor.
 
  
 0.968
amb1395
Nitrite reductase precursor.
 
  
 0.873
amb4165
Nitrite reductase precursor.
 
  
 0.872
amb2944
Nitric oxide reductase large subunit; Belongs to the heme-copper respiratory oxidase family.
 
  
 0.867
amb1404
Transcriptional regulator.
 
   
0.799
amb3086
Nitrous oxide reductase.
  
  
 0.790
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.