Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1411Probable sensor kinase silS. (502 aa)    
Predicted Functional Partners:
amb2979
FOG: CheY-like receiver.
 
 
   0.803
amb2932
Methylase of chemotaxis methyl-accepting protein.
     0.798
amb2643
FOG: CheY-like receiver.
 
   
 0.783
amb3470
FOG: CheY-like receiver.
 
     0.779
amb1431
CheY-like receiver.
 
     0.771
amb3654
Hypothetical 1041 kDa protein in hypE 3'region.
      0.620
amb1412
ABC-type amino acid transport/signal transduction systems; Periplasmic component/domain.
       0.596
amb3879
Methylase of chemotaxis methyl-accepting protein.
      0.547
amb0322
Methylase of chemotaxis methyl-accepting protein.
      0.504
amb3537
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
   0.470
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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