STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1439Teichoic acid biosynthesis protein; Belongs to the glycosyltransferase 26 family. (255 aa)    
Predicted Functional Partners:
amb1440
Glycosyltransferase.
 
 0.936
amb1442
Hypothetical protein.
 
 
 0.932
amb1441
Predicted xylanase/chitin deacetylase.
 
     0.878
amb1443
Lipid A core - O-antigen ligase and related enzyme.
       0.781
amb1446
Sugar transferase involved in lipopolysaccharide synthesis.
   
 0.647
amb1450
Succinoglycan biosynthesis transport protein exoP.
 
   
 0.625
amb1445
Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.606
amb1068
UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase.
 
 
 
 0.600
amb0039
UDP-N-acetylmuramyl pentapeptide phosphotransferase.
 
 
 
 0.534
amb1473
dTDP-6-deoxy-L-mannose-dehydrogenase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family.
  
  
 0.520
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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