STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1450Succinoglycan biosynthesis transport protein exoP. (736 aa)    
Predicted Functional Partners:
amb1452
Hypothetical protein.
 
 
 0.981
amb1446
Sugar transferase involved in lipopolysaccharide synthesis.
 
  
 0.967
amb0074
Acetyltransferase; Isoleucine patch superfamily.
  
 
 0.960
amb1454
Lipid A core - O-antigen ligase and related enzyme.
 
  
 0.878
amb0099
Predicted nucleoside-diphosphate sugar epimerase.
 
  
 0.874
amb0716
Predicted nucleoside-diphosphate sugar epimerase.
  
  
 0.854
amb1445
Membrane protein involved in the export of O-antigen and teichoic acid.
 
  
 0.837
amb1442
Hypothetical protein.
 
  
 0.836
amb0037
Xanthan biosynthesis protein xanB; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.829
amb0169
NADH:ubiquinone oxidoreductase; NADH-binding (51 kD) subunit.
     
 0.802
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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