STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1478ABC-type branched-chain amino acid transport systems; Periplasmic component. (411 aa)    
Predicted Functional Partners:
amb1477
Branched-chain amino acid ABC-type transport system; Permease component; Belongs to the binding-protein-dependent transport system permease family.
 
  
 0.983
amb1476
ABC-type branched-chain amino acid transport systems; ATPase component.
 
  
 0.947
amb1475
ABC-type branched-chain amino acid transport systems; ATPase component.
 
  
 0.931
amb1482
Hypothetical protein.
 
     0.919
amb1479
Hypothetical protein.
 
   
 0.915
amb1480
Hypothetical protein.
 
     0.914
amb1481
Uncharacterized conserved protein.
 
     0.912
amb3335
Predicted ferric reductase.
   
    0.824
amb1483
Aldehyde oxidoreductase.
 
  
 0.823
amb1484
Aerobic-type carbon monoxide dehydrogenase; Middle subunit CoxM/CutM homolog.
       0.770
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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