Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1480Hypothetical protein. (192 aa)    
Predicted Functional Partners:
amb1481
Uncharacterized conserved protein.
 
     0.956
amb1482
Hypothetical protein.
 
     0.956
amb1483
Aldehyde oxidoreductase.
 
     0.951
amb1484
Aerobic-type carbon monoxide dehydrogenase; Middle subunit CoxM/CutM homolog.
 
     0.928
amb1478
ABC-type branched-chain amino acid transport systems; Periplasmic component.
 
     0.915
amb1477
Branched-chain amino acid ABC-type transport system; Permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.870
amb1486
Adenine deaminase.
 
     0.852
amb1479
Hypothetical protein.
 
    
0.829
amb1485
Transcriptional regulator.
 
     0.819
amb1476
ABC-type branched-chain amino acid transport systems; ATPase component.
 
     0.797
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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