STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1483Aldehyde oxidoreductase. (913 aa)    
Predicted Functional Partners:
amb1484
Aerobic-type carbon monoxide dehydrogenase; Middle subunit CoxM/CutM homolog.
 
 0.999
amb2021
4-hydroxybenzoyl-CoA reductase beta subunit.
 
 0.974
amb2881
Aerobic-type carbon monoxide dehydrogenase; Middle subunit CoxM/CutM homolog.
 
 
 0.972
amb1482
Hypothetical protein.
     0.968
amb1481
Uncharacterized conserved protein.
 
     0.957
amb1480
Hypothetical protein.
 
     0.951
amb1479
Hypothetical protein.
 
     0.949
amb2022
Xanthine and CO dehydrogenase maturation factor; XdhC/CoxF family.
  
 0.845
amb1478
ABC-type branched-chain amino acid transport systems; Periplasmic component.
 
  
 0.823
amb1486
Adenine deaminase.
 
   
 0.814
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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