Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
amb1486Adenine deaminase. (400 aa)    
Predicted Functional Partners:
amb1482
Hypothetical protein.
 
  
  0.985
amb1479
Hypothetical protein.
 
     0.861
amb1481
Uncharacterized conserved protein.
 
     0.857
amb1480
Hypothetical protein.
 
     0.852
amb2177
N-formylglutamate amidohydrolase.
  
  
 0.828
amb1483
Aldehyde oxidoreductase.
 
   
 0.821
amb1477
Branched-chain amino acid ABC-type transport system; Permease component; Belongs to the binding-protein-dependent transport system permease family.
 
     0.765
amb1478
ABC-type branched-chain amino acid transport systems; Periplasmic component.
 
     0.754
amb1485
Transcriptional regulator.
 
     0.739
amb1487
Predicted acyl-CoA transferase/carnitine dehydratase; Belongs to the CoA-transferase III family.
       0.734
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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