Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1523Hypothetical protein. (617 aa)    
Predicted Functional Partners:
amb1524
Hypothetical protein.
       0.746
amb2127
Integrase; Belongs to the 'phage' integrase family.
  
    0.703
amb2123
Integrase; Belongs to the 'phage' integrase family.
  
    0.691
amb1525
Phage-related lysozyme.
 
     0.602
amb1526
Hypothetical protein.
       0.517
amb1019
Hypothetical protein.
  
     0.492
amb1021
Serine/threonine protein kinase.
  
     0.483
amb1028
Hypothetical protein.
  
     0.480
amb1029
Serine/threonine protein kinase.
  
     0.458
amb2383
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
   0.435
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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