STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1530NTP pyrophosphohydrolase including oxidative damage repair enzyme. (238 aa)    
Predicted Functional Partners:
amb1307
NTP pyrophosphohydrolase; Including oxidative damage repair enzyme.
  
 
 0.911
amb0590
Phosphoribosylpyrophosphate synthetase.
    
 0.907
amb0574
Phosphoglucomutase.
     
  0.900
ubiX
3-polyprenyl-4-hydroxybenzoate decarboxylase; Flavin prenyltransferase that catalyzes the synthesis of the prenylated FMN cofactor (prenyl-FMN) for 4-hydroxy-3-polyprenylbenzoic acid decarboxylase UbiD. The prenyltransferase is metal-independent and links a dimethylallyl moiety from dimethylallyl monophosphate (DMAP) to the flavin N5 and C6 atoms of FMN; Belongs to the UbiX/PAD1 family.
     
  0.900
amb1529
Universal stress protein UspA and related nucleotide-binding protein.
       0.773
amb1531
Fructose-2,6-bisphosphatase; Belongs to the phosphoglycerate mutase family.
       0.773
amb1528
Hypothetical protein Rv2004c/MT2060/Mb2027c.
  
    0.567
dcd
Deoxycytidine deaminase; Catalyzes the deamination of dCTP to dUTP.
       0.566
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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