Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1537Uncharacterized conserved protein. (254 aa)    
Predicted Functional Partners:
amb1536
Uncharacterized conserved protein.
       0.657
amb3188
Hypothetical protein.
  
     0.648
amb3189
Hypothetical protein.
  
     0.555
amb0319
Hypothetical protein.
  
     0.547
amb3941
NTP pyrophosphohydrolase including oxidative damage repair enzyme.
 
     0.540
amb3928
Antifreeze glycopeptide polyprotein precursor.
  
     0.515
amb1538
Methyl-accepting chemotaxis protein.
       0.513
amb3515
Hypothetical protein.
  
     0.498
amb2364
Hypothetical 288 kDa protein in nifR3-like 5'region.
  
     0.475
purC
Phosphoribosylaminoimidazolesuccinocarboxamide synthase; Belongs to the SAICAR synthetase family.
       0.472
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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