Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb1561Nitrogenase stabilizing/protective protein nifW. (102 aa)    
Predicted Functional Partners:
amb1564
NifQ protein.
 
  
 0.950
amb1569
Nitrogenase molybdenum-iron protein alpha and beta chains; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.933
amb1567
NifX protein.
 
  
 0.924
amb1568
Nitrogenase iron-molybdenum cofactor biosynthesis protein nifN; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.921
amb1572
Nitrogenase molybdenum-iron protein alpha and beta chains; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
  
 0.920
amb1583
FeMo cofactor biosynthesis protein nifB.
 
  
 0.918
amb1566
Hypothetical 175 kDa protein in nifX 3'region.
 
  
 0.908
amb1562
Isopropylmalate/homocitrate/citramalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family.
 
  
 0.896
amb1582
Putative nifZ protein.
 
   
 0.887
amb1565
Ferredoxin.
 
  
 0.883
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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