Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1580Hypothetical protein. (290 aa)    
Predicted Functional Partners:
amb1581
Protein fixU homolog.
 
    0.981
amb1582
Putative nifZ protein.
 
    0.962
amb1579
Ferredoxin V.
 
    0.925
amb1583
FeMo cofactor biosynthesis protein nifB.
 
    0.900
amb1566
Hypothetical 175 kDa protein in nifX 3'region.
 
  
 0.857
amb1561
Nitrogenase stabilizing/protective protein nifW.
 
    0.841
amb1569
Nitrogenase molybdenum-iron protein alpha and beta chains; Belongs to the NifD/NifK/NifE/NifN family.
 
    0.839
amb3580
Hypothetical 77 kDa protein in fixX 3'region.
  
    0.794
amb1567
NifX protein.
 
    0.793
amb1564
NifQ protein.
 
    0.788
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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