STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1608SAM-dependent methyltransferase. (177 aa)    
Predicted Functional Partners:
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
     
 0.682
amb1609
Uncharacterized protein; Conserved in bacteria.
       0.566
amb3188
Hypothetical protein.
  
     0.515
amb4317
Hypothetical protein.
 
     0.476
amb2845
Hypothetical protein.
  
     0.463
amb3928
Antifreeze glycopeptide polyprotein precursor.
  
     0.446
amb2892
Permease of the major facilitator superfamily.
  
     0.423
amb4328
Uncharacterized protein conserved in bacteria.
  
     0.417
amb3189
Hypothetical protein.
  
   
 0.413
amb4019
Predicted methyltransferase; TPR repeat.
   
 
 0.407
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.