Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
amb1639Hydrogenase expression/formation protein hypD2; Belongs to the HypD family. (379 aa)    
Predicted Functional Partners:
amb1636
Hydrogenase expression/formation protein hypE.
 
 0.999
amb1640
Hydrogenase maturation factor.
 
 
 0.996
amb1642
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase.
 
  
 0.993
amb1641
Hydrogenase maturation protein hypF1.
 
  
 0.972
amb1645
Hydrogenase maturation factor.
  
 
 0.972
hypA
Hydrogenase nickel incorporation protein hypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.966
amb1646
Ni,Fe-hydrogenase maturation factor.
 
   
 0.930
amb1647
Ni,Fe-hydrogenase I large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.901
amb1644
Ni,Fe-hydrogenase I large subunit.
 
   
 0.875
amb1635
Probable sensor protein hoxX; Belongs to the enoyl-CoA hydratase/isomerase family.
  
    0.831
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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