STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1639Hydrogenase expression/formation protein hypD2; Belongs to the HypD family. (379 aa)    
Predicted Functional Partners:
amb1636
Hydrogenase expression/formation protein hypE.
 
 0.998
amb1640
Hydrogenase maturation factor.
 
 
 0.996
amb1642
Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase.
 
  
 0.992
amb1645
Hydrogenase maturation factor.
  
 
 0.978
amb1641
Hydrogenase maturation protein hypF1.
 
  
 0.977
hypA
Hydrogenase nickel incorporation protein hypA; Involved in the maturation of [NiFe] hydrogenases. Required for nickel insertion into the metal center of the hydrogenase.
 
  
 0.970
amb1646
Ni,Fe-hydrogenase maturation factor.
 
   
 0.896
amb1647
Ni,Fe-hydrogenase I large subunit; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.
 
 
 0.895
amb1644
Ni,Fe-hydrogenase I large subunit.
 
   
 0.878
amb1635
Probable sensor protein hoxX; Belongs to the enoyl-CoA hydratase/isomerase family.
 
    0.824
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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