Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
amb1656Response regulator; Containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains. (445 aa)    
Predicted Functional Partners:
amb1657
Signal transduction histidine kinase regulating C4-dicarboxylate transport system.
 0.992
amb4147
C4-dicarboxylate transport sensor protein dctB.
   
 0.908
amb3937
DNA-directed RNA polymerase specialized sigma subunit; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
   
 0.793
amb1872
PAS/PAC domain.
 
 
0.632
amb2366
Signal transduction histidine kinase; Nitrogen specific.
 
 0.601
amb0496
ATPase involved in chromosome partitioning.
  
 
 0.560
amb1110
Signal transduction histidine kinase.
  
 
 0.542
amb3329
Hypothetical 1041 kDa protein in hypE 3'region.
  
 
 0.538
amb3498
Flagellar motor switch protein fliM; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
  
 0.505
amb2205
Signal transduction histidine kinase.
 
 
 
 0.489
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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