Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb1663Bacterioferritin; Belongs to the bacterioferritin family. (194 aa)    
Predicted Functional Partners:
amb1664
Bacterioferritin subunit 2; Belongs to the bacterioferritin family.
 
 
  
0.934
hemH
Protoheme ferro-lyase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
     
 0.909
amb0783
Putative heme iron utilization protein.
     
  0.900
amb1662
Fe2+/Zn2+ uptake regulation protein; Belongs to the Fur family.
  
  
 0.788
amb0824
Bacterioferritin subunit 2; Iron-storage protein.
   
   0.705
amb0531
Anaerobic dehydrogenase; Typically selenocysteine-containing; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
  
 
 0.696
amb0334
Serine phosphatase RsbU; Regulator of sigma subunit.
   
  
 0.605
amb3520
Serine phosphatase RsbU, regulator of sigma subunit.
   
  
 0.605
amb1661
Predicted Na+-dependent transporter.
       0.563
amb0333
Anti-anti-sigma regulatory factor; Belongs to the anti-sigma-factor antagonist family.
   
  
 0.431
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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