Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
amb1695Ankyrin repeat. (1044 aa)    
Predicted Functional Partners:
bamA
Outer membrane protein/protective antigen OMA87; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.909
amb1708
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
 
 0.880
bamD
DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.838
amb3138
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
 
 0.784
amb1697
Guanosine polyphosphate pyrophosphohydrolase/synthetase.
  
  
 0.783
amb1696
Hypothetical protein.
       0.773
amb1148
Hypothetical protein.
  
 0.766
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
 
 0.760
amb3561
Nucleoside diphosphate kinase; Belongs to the NDK family.
  
 0.758
amb1418
Predicted membrane protein.
  
 0.754
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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