STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
amb1695Ankyrin repeat. (1044 aa)    
Predicted Functional Partners:
amb1708
Trypsin-like serine protease; Typically periplasmic, contain C-terminal PDZ domain.
 
 0.900
bamA
Outer membrane protein/protective antigen OMA87; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 0.891
amb1949
Phenolpthiocerol synthesis polyketide synthase ppsA.
 
 0.889
amb3393
NAD-reducing hydrogenase diaphorase moiety largesubunit; hoxF homolog.
 
 
 0.857
amb1148
Hypothetical protein.
  
 0.846
amb0169
NADH:ubiquinone oxidoreductase; NADH-binding (51 kD) subunit.
   
 0.837
amb0947
Hypothetical protein.
   
 0.818
amb4317
Hypothetical protein.
   
 0.818
bamD
DNA uptake lipoprotein; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
 
 0.808
amb1697
Guanosine polyphosphate pyrophosphohydrolase/synthetase.
     
 0.783
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.