Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1722Hypothetical protein. (665 aa)    
Predicted Functional Partners:
amb1723
Hypothetical protein.
       0.773
amb0222
TPR repeat SEL1 subfamily.
 
     0.763
amb0557
TPR repeat; SEL1 subfamily.
 
     0.732
amb2240
TPR repeat; SEL1 subfamily.
 
 
 
 0.564
amb3438
Sensor protein gacS.
 
 
 
 0.546
amb4146
Signal transduction histidine kinase.
 
 
 
 0.539
amb1903
ATPase of the AAA+ class.
 
 
 0.535
amb0615
Flagellar basal body rod protein; Belongs to the flagella basal body rod proteins family.
   
 
 0.507
amb2936
Predicted ATPase.
 
  
 0.496
amb1110
Signal transduction histidine kinase.
   
 
 0.490
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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