Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
amb1763Mu-like prophage FluMu protein gp28. (545 aa)    
Predicted Functional Partners:
amb1764
Mu-like prophage FluMu protein gp29.
 
    0.951
amb1765
Mu-like prophage FluMu F protein.
 
    0.951
amb1767
Hypothetical protein.
 
     0.865
amb1766
Mu-like prophage FluMu I protein.
 
     0.861
amb1768
Mu-like prophage major head subunit gpT.
 
     0.858
amb1770
Mu-like prophage protein gp36.
 
     0.846
amb0447
Hypothetical protein.
 
     0.790
amb1784
Site-specific DNA methylase.
 
    0.786
amb1752
Mu-like prophage protein gp16.
 
    0.785
amb0462
Mu-like prophage protein gp16.
 
    0.784
Your Current Organism:
Magnetospirillum magneticum
NCBI taxonomy Id: 342108
Other names: M. magneticum AMB-1, Magnetospirillum magneticum AMB-1, Magnetospirillum magneticum str. AMB-1, Magnetospirillum magneticum strain AMB-1, Magnetospirillum sp. (strain AMB-1), Magnetospirillum sp. AMB-1
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